Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs2003617 chr22:18439238 T/C 9.6E-7 488 30.8 32.22 26.2 KM Plot
PRAD rs200513445 chr7:6771552 G/A 4.29E-11 482 31.18 28.3 38.33 KM Plot
PRAD rs200564589 chr7:6782130 T/C 7.76E-5 485 31.12 30.08 38.33 KM Plot
PRAD rs200589833 chr9:72826547 CAA/C 1.72E-5 494 30.8 31.35 22.45 KM Plot
PRAD rs200597024 chr9:138675247 CCAGA/C 3.53E-5 474 31.63 28.7 15.78 KM Plot
PRAD rs200650902 chr6:111538789 AT/A 1.74E-6 489 31.27 31.15 20.53 KM Plot
PRAD rs200892856 chr2:97602205 T/TG 6.54E-5 484 30.8 33.6 24.87 KM Plot
PRAD rs2009186 chr17:76870693 G/T 3.38E-5 478 23.2 32.92 30.8 KM Plot
PRAD rs201294561 chr7:135109566 A/AC 1.81E-9 493 30.8 31.4 3.03 KM Plot
PRAD rs201324869 chr16:58044299 G/GT 2.04E-5 488 30.8 31.8 44.3 KM Plot
PRAD rs201356215 chr15:82584430 G/A 5.77E-10 488 29.63 34.43 29 KM Plot
PRAD rs201475130 chr8:105559475 T/TTC 6.42E-5 491 31.37 28.92 12.87 KM Plot
PRAD rs201489666 chr19:49985884 ATT/A 1.42E-5 485 30.73 33.1 26.47 KM Plot
PRAD rs201501215 chr5:154175371 CCATA/C 0 491 30.2 33.47 4.87 KM Plot
PRAD rs201707674 chr15:83368034 T/A 4.37E-7 490 31.18 30.55 29.08 KM Plot